Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use

Abstract

BACKGROUND: Smoking and alcohol use have been associated with common genetic variants in multiple loci. Rare variants within these loci hold promise in the identification of biological mechanisms in substance use. Exome arrays and genotype imputation can now efficiently genotype rare nonsynonymous and loss of function variants. Such variants are expected to have deleterious functional consequences and to contribute to disease risk.

Authors Brazel, David M.; Jiang, Yu; Hughey, Jordan M.; Turcot, Valerie; Zhan, Xiaowei; Gong, Jian; Batini, Chiara; Weissenkampen, J. Dylan; Liu, MengZhen; Barnes, Daniel R.; Bertelsen, Sarah; Chou, Yi-Ling; Erzurumluoglu, A. Mesut; Faul, Jessica D.; Haessler, Jeff; Hammerschlag, Anke R.; Hsu, Chris; Kapoor, Manav; Lai, Dongbing; Le, Nhung; de Leeuw, Christiaan A.; Loukola, Anu; Mangino, Massimo; Melbourne, Carl A.; Pistis, Giorgio; Qaiser, Beenish; Rohde, Rebecca; Shao, Yaming; Stringham, Heather; Wetherill, Leah; Zhao, Wei; Agrawal, Arpana; Bierut, Laura; Chen, Chu; Eaton, Charles B.; Goate, Alison; Haiman, Christopher; Heath, Andrew; Iacono, William G.; Martin, Nicholas G.; Polderman, Tinca J.; Reiner, Alex; Rice, John; Schlessinger, David; Scholte, H. Steven; Smith, Jennifer A.; Tardif, Jean-Claude; Tindle, Hilary A.; van der Leij, Andries R.; Boehnke, Michael; Chang-Claude, Jenny; Cucca, Francesco; David, Sean P.; Foroud, Tatiana; Howson, Joanna M. M.; Kardia, Sharon L. R.; Kooperberg, Charles; Laakso, Markku; Lettre, Guillaume; Madden, Pamela; Mcgue, Matt; North, Kari; Posthuma, Danielle; Spector, Timothy; Stram, Daniel; Tobin, Martin D.; Weir, David R.; Kaprio, Jaakko; Abecasis, Goncalo R.; Liu, Dajiang J.; Vrieze, Scott; Surendran, Praveen; Young, Robin; Barnes, Daniel R.; Nielsen, Sune Fallgaard; Rasheed, Asif; Samuel, Maria; Zhao, Wei; Kontto, Jukka; Perola, Markus; Caslake, Muriel; de Craen, Anton J. M.; Trompet, Stella; Uria-Nickelsen, Maria; Malarstig, Anders; Reily, Dermot F.; Hoek, Maarten; Vogt, Thomas; Jukema, J. Wouter; Sattar, Naveed; Ford, Ian; Packard, Chris J.; Alam, Dewan S.; Majumder, Abdulla al Shafi; Di Ange-Lantonio, Emanuele; Chowdhury, Rajiv; Amouyel, Philippe; Arveiler, Dominique; Blankenberg, Stefan; Ferrieres, Jean; Kee, Frank; Kuulasmaa, Kari; Mueller-Nurasyid, Martina; Veronesi, Giovanni; Virtamo, Jarmo; Frossard, Philippe; Nordestgaard, Borge Gronne; Saleheen, Danish; Danesh, John; Butterworth, Adam S.; Howson, Joanna M. M.; Erzurumluoglu, A. Mesut; Jackson, Victoria E.; Melbourne, Carl A.; Varga, Tibor V.; Warren, Helen R.; Tragante, Vinicius; Tachmazidou, Ioanna; Harris, Sarah E.; Evangelou, Evangelos; Marten, Jonathan; Zhang, Weihua; Altmaier, Elisabeth; Luan, Jian'an; Langenberg, Claudia; Scott, Robert A.; Yaghootkar, Hanieh; Stirrups, Kathleen; Kanoni, Stavroula; Marouli, Eirini; Karpe, Fredrik; Dominiczak, Anna F.; Sever, Peter; Poulter, Neil; Rolandsson, Olov; Baumbach, Clemens; Afaq, Saima; Chambers, John C.; Kooner, Jaspal S.; Wareham, Nicholas J.; Renstrom, Frida; Hallmans, Goran; Marioni, Riccardo E.; Corley, Janie; Starr, John M.; Verweij, Niek; de Boer, Rudolf A.; van der Meer, Peter; Yavas, Ersin; Vaartjes, Ilonca; Bots, Michiel L.; Asselbergs, Folkert W.; Grabe, Hans J.; Volzke, Henry; Nauck, Matthias; Weiss, Stefan; Pharoah, Paul D. P.; Dunning, Alison M.; Dennis, Joe G.; Thompson, Deborah J.; Michailidou, Kyriaki; Easton, Douglas F.; Antoniou, Antonis C.; Tyrrell, Jessica; Mihailov, Evelin; Samani, Nilesh J.; Zhou, Kaixin; Neville, Matthew J.; Metspalu, Andres; Palmer, Colin N. A.; Hall, Ian P.; Strachan, David P.; Deary, Ian J.; Frayling, Tim M.; Hayward, Caroline; van der Harst, Pim; Zeggini, Eleftheria; Munroe, Patricia B.; Jansson, Jan-Hakan; Franks, Paul W.; Deloukas, Panos; Caulfield, Mark J.; Wain, Louise V.; Tobin, Martin D.
Journal BIOLOGICAL PSYCHIATRY
Pages 946-955
Volume 85
Date 1/06/2019
Grant ID
Funding Body National Institute on Drug Abuse
URL http://www.ncbi.nlm.nih.gov/pubmed/?term=10.1016/j.biopsych.2018.11.024
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