QIMR Berghofer
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Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation
Gingras, Marie-Claude; Covington, Kyle R.; Chang, David K.; Donehower, Lawrence A.; Gill, Anthony J.; Ittmann, Michael M.; Creighton, Chad J.; Johns, Amber L.; Shinbrot, Eve; Dewal, Ninad; Fisher, William E.; Pilarsky, Christian; Gruetzmann, Robert; Overman, Michael J.; Jamieson, Nigel B.; Van Buren, George, II; Drummond, Jennifer; Walker, Kimberly; Hampton, Oliver A.; Xi, Liu; Muzny, Donna M.; Doddapaneni, Harsha; Lee, Sandra L.; Bellair, Michelle; Hu, Jianhong; Han, Yi; Dinh, Huyen H.; Dahdouli, Mike; Samra, Jaswinder S.; Bailey, Peter; Waddell, Nic; Pearson, John V.; Harliwong, Ivon; Wang, Huamin; Aust, Daniela; Oien, Karin A.; Hruban, Ralph H.; Hodges, Sally E.; McElhany, Amy; Saengboonmee, Charupong; Duthie, Fraser R.; Grimmond, Sean M.; Biankin, Andrew V.; Wheeler, David A.; Gibbs, Richard A.
Cell Reports - 1/02/2016
HGSC-BCM: NHGRI - U54 HG003273
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
Alioto, Tyler S.; Buchhalter, Ivo; Derdak, Sophia; Hutter, Barbara; Eldridge, Matthew D.; Hovig, Eivind; Heisler, Lawrence E.; Beck, Timothy A.; Simpson, Jared T.; Tonon, Laurie; Sertier, Anne-Sophie; Patch, Ann-Marie; Jaeger, Natalie; Ginsbach, Philip; Drews, Ruben; Paramasivam, Nagarajan; Kabbe, Rolf; Chotewutmontri, Sasithorn; Diessl, Nicolle; Previti, Christopher; Schmidt, Sabine; Brors, Benedikt; Feuerbach, Lars; Heinold, Michael; Groebner, Susanne; Korshunov, Andrey; Tarpey, Patrick S.; Butler, Adam P.; Hinton, Jon; Jones, David; Menzies, A; Raine, Keiran; Shepherd, Rebecca; Stebbings, Lucy; Teague, Jon W.; Ribeca, Paolo; Giner, Francesc Castro; Beltran, Sergi; Raineri, Emanuele; Dabad, Marc; Heath, Simon C.; Gut, Marta; Denroche, Robert E.; Harding, Nicholas J.; Yamaguchi, Takafumi N.; Fujimoto, Akihiro; Nakagawa, Hidewaki; Quesada, Victor; Valdes-Mas, Rafael; Nakken, Sigve; Vodak, Daniel; Bower, Lawrence; Lynch, Andrew G.; Anderson, Charlotte L.; Waddell, Nic; Pearson, John V.; Grimmond, Sean M.; Peto, Myron; Spellman, Paul; He, Minghui; Kandoth, Cyriac; Lee, Semin; Zhang, John; Letourneau, Louis; Ma, Singer; Seth, Sahil; Torrents, David; Xi, Liu; Wheeler, David A.; Lopez-Otin, Carlos; Campo, Elias; Campbell, Peter J.; Boutros, Paul C.; Puente, Xose S.; Gerhard, Daniela S.; Pfister, Stefan M.; McPherson, John D.; Hudson, Thomas J.; Schlesner, Matthias; Lichter, Peter; Eils, Roland; Jones, David T. W.; Gut, Ivo G.
Nature Communications - 1/12/2015
Recurrent inactivating RASA2 mutations in melanoma
Arafeh, Rand; Qutob, Nouar; Emmanuel, Rafi; Keren-Paz, Alona; Madore, Jason; Elkahloun, Abdel; Wilmott, James S.; Gartner, Jared J.; Di Pizio, Antonella; Winograd-Katz, Sabina; Sindiri, Sivasish; Rotkopf, Ron; Dutton-Regester, Ken; Johansson, P; Pritchard, Antonia L.; Waddell, Nic; Hill, Victoria K.; Lin, Jimmy C.; Hevroni, Yael; Rosenberg, Steven A.; Khan, Javed; Ben-Dor, Shifra; Niv, Masha Y.; Ulitsky, Igor; Mann, Graham J.; Scolyer, Richard A.; Hayward, NK; Samuels, Yardena
NATURE GENETICS - 1/12/2015
Integrated genomic and transcriptomic analysis of human brain metastases identifies alterations of potential clinical significance
Saunus, Jodi M.; Quinn, Michael C. J.; Patch, Ann-Marie; Pearson, John V.; Bailey, Peter J.; Nones, Katia; Reed, Amy E. McCart; Miller, David; Wilson, P; Al-Ejeh, Fares; Mariasegaram, Mythily; Lau, Queenie; Withers, Teresa; Jeffree, Rosalind L.; Reid, L.; Da Silva, Leonard; Matsika, Admire; Niland, Colleen M.; Cummings, M; Bruxner, Timothy J. C.; Christ, Angelika N.; Harliwong, Ivon; Idrisoglu, Senel; Manning, Suzanne; Nourse, Craig; Nourbakhsh, Ehsan; Wani, Shivangi; Anderson, Matthew J.; Fink, J. Lynn; Holmes, Oliver; Kazakoff, Stephen; Leonard, Conrad; Newell, Felicity; Taylor, DF; Waddell, Nic; Wood, Scott; Xu, Qinying; Kassahn, Karin S.; Narayanan, Vairavan; Taib, Nur Aishah Mohd; Teo, Soo Hwang; Chow, Yock Ping; Jat, Parmjit S.; Brandner, Sebastian; Flanagan, Adrienne M.; Khanna, Kum Kum; Chenevix-Trench, G; Grimmond, Sean; Simpson, PT; Lakhani, S. R.
JOURNAL OF PATHOLOGY - 1/11/2015
NHMRC - APP1030751
Using the MCF10A/MCF10CA1a Breast Cancer Progression Cell Line Model to Investigate the Effect of Active, Mutant Forms of EGFR in Breast Cancer Development and Treatment Using Gefitinib
Bessette, Darrell C.; Tilch, E.; Seidens, T.; Quinn, Michael C. J.; Wiegmans, A.; Shi, Wei; Cocciardi, Sibylle; McCart-Reed, Amy; Saunus, Jodi M.; Simpson, PT; Grimmond, Sean; Lakhani, S. R.; Khanna, Kum Kum; Waddell, Nic; Al-Ejeh, Fares; Chenevix-Trench, Georgia
PLOS ONE - 1/05/2015
Whole-genome characterization of chemoresistant ovarian cancer
Patch, Ann-Marie; Christie, Elizabeth L.; Etemadmoghadam, Dariush; Garsed, Dale W.; George, Joshy; Fereday, Sian; Nones, Katia; Cowin, Prue A.; Alsop, Kathryn; Bailey, Peter J.; Kassahn, Karin S.; Newell, Felicity; Quinn, Michael C. J.; Kazakoff, Stephen; Quek, Kelly; Wilhelm-Benartzi, Charlotte; Curry, Ed; Leong, Huei San; Hamilton, Anne; Mileshkin, Linda; Au-Yeung, George; Kennedy, Catherine; Hung, Jillian A.; Chiew, Yoke-Eng; Harnett, Paul; Friedlander, Michael; Quinn, Michael A.; Pyman, Jan; Cordner, Stephen; O'Brien, Patricia; Leditschke, Jodie; Young, Greg; Strachan, Kate; Waring, P; Azar, Walid; Mitchell, Chris; Traficante, Nadia; Hendley, Joy; Thorne, Heather; Shackleton, Mark; Miller, David; Arnau, Gisela Mir; Tothill, Richard W.; Holloway, Timothy P.; Semple, Timothy; Harliwong, Ivon; Nourse, Craig; Nourbakhsh, Ehsan; Manning, Suzanne; Idrisoglu, Senel; Bruxner, Timothy J. C.; Christ, Angelika N.; Poudel, Barsha; Holmes, Oliver; Anderson, Matthew; Leonard, Conrad; Lonie, Andrew; Hall, Nathan; Wood, Scott; Taylor, DF; Xu, Qinying; Fink, J. Lynn; Waddell, Nic; Drapkin, Ronny; Stronach, Euan; Gabra, Hani; Brown, Robert; Jewell, Andrea; Nagaraj, Shivashankar H.; Markham, Emma; Wilson, Peter J.; Ellul, Jason; McNally, Orla; Doyle, Maria A.; Vedururu, Ravikiran; Stewart, Collin; Lengyel, Ernst; Pearson, John V.; Waddell, Nicola; defazio, Anna; Grimmond, Sean; Bowtell, David D. L.
NATURE - 1/05/2015
Genomic and transcriptomic landscapes of human brain metastases
Saunus, Jodi M.; Quinn, M. C. J.; Patch, A. M.; Pearson, J. V.; Bailey, P. J.; Cloonan, N.; Nones, K.; Miller, D.; Mariasegaram, M.; Lau, Q.; Jeffree, L.; Khanna, Kum Kum; Chenevix-Trench, G.; Grimmond, S. M.; Simpson, P.; Waddell, Nic; Lakhani, S. R.
Clinical and Experimental Metastasis - 1/03/2015
Whole genomes redefine the mutational landscape of pancreatic cancer
Waddell, Nic; Pajic, Marina; Patch, Ann-Marie; Chang, David K.; Kassahn, Karin S.; Bailey, Peter J.; Johns, Amber L.; Miller, David; Nones, Katia; Quek, Kelly; Quinn, Michael C. J.; Robertson, Alan J.; Fadlullah, Muhammad Z. H.; Bruxner, Tim J. C.; Christ, Angelika N.; Harliwong, Ivon; Idrisoglu, Senel; Manning, Suzanne; Nourse, Craig; Nourbakhsh, Ehsan; Wani, Shivangi; Wilson, Peter J.; Markham, Emma; Cloonan, Nicole; Anderson, Matthew J.; Fink, J. Lynn; Holmes, Oliver; Kazakoff, Stephen; Leonard, Conrad; Newell, Felicity; Poudel, Barsha; Song, Sarah; Taylor, DF; Wood, Scott; Xu, Qinying; Wu, Jianmin; Pinese, Mark; Cowley, Mark J.; Lee, Hong C.; Jones, MD; Nagrial, Adnan M.; Humphris, Jeremy; Chantrill, Lorraine A.; Chin, Venessa; Steinmann, Angela M.; Mawson, Amanda; Humphrey, Emily S.; Colvin, Emily K.; Chou, Angela; Scarlett, Christopher J.; Pinho, Andreia V.; Giry-Laterriere, Marc; Rooman, Ilse; Samra, Jaswinder S.; Kench, James G.; Pettitt, Jessica A.; Merrett, N; Toon, Christopher W.; Epari, Krishna; Nguyen, Nam Q.; Barbour, Andrew; Zeps, Nikolajs; Jamieson, Nigel B.; Graham, Janet S.; Niclou, Simone P.; Bjerkvig, Rolf; Gruetzmann, Robert; Aust, Daniela; Hruban, Ralph H.; Maitra, Anirban; Iacobuzio-Donahue, Christine A.; Wolfgang, Christopher L.; Morgan, Richard A.; Lawlor, Rita T.; Corbo, Vincenzo; Bassi, Claudio; Falconi, Massimo; Zamboni, Giuseppe; Tortora, Giampaolo; Tempero, Margaret A.; Gill, Anthony J.; Eshleman, James R.; Pilarsky, Christian; Scarpa, Aldo; Musgrove, Elizabeth A.; Pearson, John V.; Biankin, Andrew V.; Grimmond, Sean
NATURE - 1/02/2015
Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis
Nones, Katia; Waddell, Nic; Wayte, Nicci; Patch, Ann-Marie; Bailey, Peter J.; Newell, Felicity; Holmes, Oliver; Fink, J. Lynn; Quinn, Michael C. J.; Tang, Yue Hang; Lampe, Guy; Quek, Kelly; Loffler, Kelly A.; Manning, Suzanne; Idrisoglu, Senel; Miller, David; Xu, Qinying; Wilson, Peter J.; Bruxner, Timothy J. C.; Christ, Angelika N.; Harliwong, Ivon; Nourse, Craig; Nourbakhsh, Ehsan; Anderson, Matthew; Kazakoff, Stephen; Leonard, Conrad; Wood, Scott; Simpson, PT; Reid, L.; Krause, Lutz; Hussey, Damian J.; Watson, David I.; Lord, Reginald V.; Nancarrow, Derek J.; Phillips, Wayne A.; Gotley, David; Smithers, B. M.; Whiteman, David; Hayward, NK; Campbell, Peter; Pearson, John V.; Grimmond, Sean; Barbour, AP
Nature Communications - 1/10/2014
Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.
Nones, Katia; Waddell, Nic; Wayte, Nicci; Patch, Ann-Marie; Bailey, Peter J.; Newell, Felicity; Holmes, Oliver; Fink, J. Lynn; Quinn, Michael C. J.; Tang, Yue Hang; Lampe, Guy; Quek, Kelly; Loffler, Kelly A.; Manning, Suzanne; Idrisoglu, Senel; Miller, David; Xu, Qinying; Wilson, Peter J.; Bruxner, Timothy J. C.; Christ, Angelika N.; Harliwong, Ivon; Nourse, Craig; Nourbakhsh, Ehsan; Anderson, Matthew; Kazakoff, Stephen; Leonard, Conrad; Wood, Scott; Simpson, PT; Reid, L.; Krause, Lutz; Hussey, Damian J.; Watson, David I.; Lord, Reginald V.; Nancarrow, Derek J.; Phillips, Wayne A.; Gotley, David; Smithers, B. M.; Whiteman, David; Hayward, NK; Campbell, Peter; Pearson, John V.; Grimmond, Sean; Barbour, AP
Nature Communications - 1/10/2014
miR-139-5p is a regulator of metastatic pathways in breast cancer
Krishnan, Keerthana; Steptoe, Anita L.; Martin, Hilary C.; Pattabiraman, Diwakar R.; Nones, Katia; Waddell, Nic; Mariasegaram, Mythily; Simpson, PT; Lakhani, SR; Vlassov, Alexander; Grimmond, Sean; Cloonan, Nicole
RNA - 1/12/2013
Evaluating the repair of DNA derived from formalin-fixed paraffin-embedded tissues prior to genomic profiling by SNP-CGH analysis.
Hosein, Abdel Nasser; Song, Sarah; Reed, Amy E. McCart; Jayanthan, Janani; Reid, L.; Kutasovic, Jamie R.; Cummings, Margaret; Waddell, Nic; Lakhani, SR; Chenevix-Trench, Georgia; Simpson, PT
LABORATORY INVESTIGATION - 30/06/2013
Identification of fifteen novel germline variants in the BRCA1 3'UTR reveals a variant in a breast cancer case that introduces a functional miR-103 target site
Brewster, Brooke L.; Rossiello, Francesca; French, Juliet D.; Edwards, Stacey L.; Wong, M; Wronski, Ania; Whiley, Phillip J.; Waddell, Nic; Chen, Xiaowei; Bove, Betsy; Hopper, John L.; John, Esther M.; Andrulis, Irene L.; Daly, Mary; Volorio, Sara; Bernard, Loris; Peissel, Bernard; Manoukian, Siranoush; Barile, Monica; Pizzamiglio, Sara; Verderio, Paolo; Spurdle, Amanda B.; Radice, Paolo; Godwin, Andrew K.; Southey, Melissa; Brown, M; Peterlongo, Paolo
HUMAN MUTATION - 4/12/2012
Morphological and molecular analysis of a breast cancer cluster at the ABC Studio in Toowong.
Waddell, Nic; Stein, Sandra R.; Wagner, S. A.; Bennett, IC; Djougarian, A.; Melana, S.; Jaffer, S.; Holland, J. F.; Pogo, B. G. T.; Gonda, T. J.; Brown, M; Leo, Paul; Saunders, Nicholas A.; McMillan, Nigel A. J.; Cocciardi, Sibylle; Vargas, A. C.; Lakhani, S. R.; Chenevix-Trench, G; Newman, B.; Francis, Glenn D.
PATHOLOGY - 1/07/2012