QIMR Berghofer
Publication Search
By Year 
Author Correction: Targeting novel LSD1-dependent ACE2 demethylation domains inhibits SARS-CoV-2 replication.
Tu, Wen Juan; McCuaig, Robert D; Melino, Michelle; Rawle, Daniel J; Le, Thuy T; Yan, Kexin; Suhrbier, Andreas; Johnston, Rebecca L; Koufariotis, Lambros T; Waddell, Nicola; Cross, Emily M; Tsimbalyuk, Sofiya; Bain, Amanda; Ahern, Elizabeth; Collinson, Natasha; Phipps, Simon; Forwood, Jade K; Seddiki, Nabila; Rao, Sudha
Cell discovery - 1/01/2021
Considerations for using population frequency data in germline variant interpretation: cancer syndrome genes as a model.
Davidson, Aimee L; Leonard, Conrad; Koufariotis, Lambros T; Parsons, Michael T; Hollway, Georgina E; Pearson, John V; Newell, Felicity; Waddell, Nicola; Spurdle, Amanda B
HUMAN MUTATION - 1/01/2021
Radiomics Biomarkers correlate with CD8 expression and Predict Immune Signatures in Melanoma Patients.
Aoude, Lauren G; Wong, Bernadette; Bonazzi, Vanessa F; Brosda, Sandra; Walters, Shaun B; Koufariotis, Lambros T; Naeini, Marjan M; Pearson, John V; Oey, Harald; Patel, Kalpana; Bradford, Julia J; Bloxham, Conor J; Atkinson, Victoria; Law, Phillip; Strutton, Geoffrey; Bayley, Gerard; Yang, Samuel; Smithers, B Mark; Waddell, Nicola; Miles, Kenneth; Barbour, Andrew P
Molecular cancer research : MCR - 1/01/2021
The Genomic Landscape of Lobular Breast Cancer.
McCart Reed, Amy E; Foong, Samuel; Kutasovic, Jamie R; Nones, Katia; Waddell, Nicola; Lakhani, Sunil R; Simpson, Peter T
Cancers - 1/01/2021
Tumor Signature Analysis Implicates Hereditary Cancer Genes in Endometrial Cancer Development.
Kondrashova, Olga; Shamsani, Jannah; O'Mara, Tracy A; Newell, Felicity; Reed, Amy E McCart; Lakhani, Sunil R; Kirk, Judy; Pearson, John V; Waddell, Nicola; Spurdle, Amanda B
Cancers - 1/01/2021
Queensland Genomics: an adaptive approach for integrating genomics into a public healthcare system.
Vidgen, Miranda E; Williamson, Dayna; Cutler, Katrina; McCafferty, Claire; Ward, Robyn L; McNeil, Keith; Waddell, Nicola; Bunker, David
Npj Genomic Medicine - 1/01/2021
Deep learning in cancer diagnosis, prognosis and treatment selection.
Tran, Khoa A; Kondrashova, Olga; Bradley, Andrew; Williams, Elizabeth D; Pearson, John V; Waddell, Nicola
GENOME MEDICINE - 1/01/2021
DNA methylation patterns identify subgroups of pancreatic neuroendocrine tumors with clinical association.
Lakis, Vanessa; Lawlor, Rita T; Newell, Felicity; Patch, Ann-Marie; Mafficini, Andrea; Sadanandam, Anguraj; Koufariotis, Lambros T; Johnston, Rebecca L; Leonard, Conrad; Wood, Scott; Rusev, Borislav; Corbo, Vincenzo; Luchini, Claudio; Cingarlini, Sara; Landoni, Luca; Salvia, Roberto; Milella, Michele; Chang, David; Bailey, Peter; Jamieson, Nigel B; Duthie, Fraser; Gingras, Marie-Claude; Muzny, Donna M; Wheeler, David A; Gibbs, Richard A; Milione, Massimo; , ; , ; Pederzoli, Paolo; Samra, Jaswinder S; Gill, Anthony J; Johns, Amber L; Pearson, John V; Biankin, Andrew V; Grimmond, Sean M; Waddell, Nicola; Nones, Katia; Scarpa, Aldo
Communications Biology - 1/01/2021
Histone Modifying Enzymes in Gynaecological Cancers.
Ramarao-Milne, Priya; Kondrashova, Olga; Barry, Sinead; Hooper, John D; Lee, Jason S; Waddell, Nicola
Cancers - 1/01/2021
ERK and mTORC1 Inhibitors Enhance the Anti-Cancer Capacity of the Octpep-1 Venom-Derived Peptide in Melanoma BRAF(V600E) Mutations.
Moral-Sanz, Javier; Fernandez-Rojo, Manuel A; Potriquet, Jeremy; Mukhopadhyay, Pamela; Brust, Andreas; Wilhelm, Patrick; Smallwood, Taylor B; Clark, Richard J; Fry, Bryan G; Alewood, Paul F; Waddell, Nicola; Miles, John J; Mulvenna, Jason P; Ikonomopoulou, Maria P
Toxins - 1/01/2021
Targeting novel LSD1-dependent ACE2 demethylation domains inhibits SARS-CoV-2 replication.
Tu, Wen Juan; McCuaig, Robert D; Melino, Michelle; Rawle, Daniel J; Le, Thuy T; Yan, Kexin; Suhrbier, Andreas; Johnston, Rebecca L; Koufariotis, Lambros T; Waddell, Nicola; Cross, Emily M; Tsimbalyuk, Sofiya; Bain, Amanda; Ahern, Elizabeth; Collinson, Natasha; Phipps, Simon; Forwood, Jade K; Seddiki, Nabila; Rao, Sudha
Cell discovery - 1/01/2021
Correction: McCart Reed et al. The Genomic Landscape of Lobular Breast Cancer. Cancers 2021, 13, 1950.
McCart Reed, Amy E; Foong, Samuel; Kutasovic, Jamie R; Nones, Katia; Waddell, Nicola; Lakhani, Sunil R; Simpson, Peter T
Cancers - 1/01/2021
Sharing genomic data from clinical testing with researchers: public survey of expectations of clinical genomic data management in Queensland, Australia.
Vidgen, Miranda E; Kaladharan, Sid; Malacova, Eva; Hurst, Cameron; Waddell, Nicola
BMC medical ethics - 1/11/2020
National Health and Medical Research Council - APP1139071
Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity.
Newell, Felicity; Wilmott, James S; Johansson, Peter A; Nones, Katia; Addala, Venkateswar; Mukhopadhyay, Pamela; Broit, Natasa; Amato, Carol M; Van Gulick, Robert; Kazakoff, Stephen H; Patch, Ann-Marie; Koufariotis, Lambros T; Lakis, Vanessa; Leonard, Conrad; Wood, Scott; Holmes, Oliver; Xu, Qinying; Lewis, Karl; Medina, Theresa; Gonzalez, Rene; Saw, Robyn P M; Spillane, Andrew J; Stretch, Jonathan R; Rawson, Robert V; Ferguson, Peter M; Dodds, Tristan J; Thompson, John F; Long, Georgina V; Levesque, Mitchell P; Robinson, William A; Pearson, John V; Mann, Graham J; Scolyer, Richard A; Waddell, Nicola; Hayward, Nicholas K
Nature Communications - 1/10/2020
National Health and Medical Research Council of Australia (NHMRC) Program Grant - 1093017
Queensland Consumers' Awareness and Understanding of Clinical Genetics Services.
Wallingford, Courtney K; Cutler, Katrina; Istiko, Satrio Nindyo; Fowles, Lindsay F; Lamb, Rachel; Bean, Jessica; Healy, Louise; Hondow, Gary; Pratt, Gregory; Vidgen, Miranda E; Waddell, Nicola; Evans, Erin; Bunker, David; McInerney-Leo, Aideen M
FRONTIERS IN GENETICS - 1/10/2020
Pathogenic germline variants are associated with poor survival in stage III/IV melanoma patients.
Aoude, Lauren G; Bonazzi, Vanessa F; Brosda, Sandra; Patel, Kalpana; Koufariotis, Lambros T; Oey, Harald; Nones, Katia; Wood, Scott; Pearson, John V; Lonie, James M; Arneil, Melissa; Atkinson, Victoria; Smithers, B Mark; Waddell, Nicola; Barbour, Andrew P
SCIENTIFIC REPORTS - 1/10/2020
National Health and Medical Research Council - APP1109048
Tumor mutation burden and structural chromosomal aberrations are not associated with T-cell density or patient survival in acral, mucosal, and cutaneous melanomas.
Edwards, Jarem; Ferguson, Peter M; Lo, Serigne N; Pires da Silva, Ines; Colebatch, Andrew J; Lee, Hansol; Saw, Robyn Pm; Thompson, John F; Menzies, Alexander M; Long, Georgina V; Newell, Felicity; Pearson, John; Waddell, Nicola; Hayward, Nicholas; Johansson, Peter A; Mann, Graham; Scolyer, Richard A; Palendira, Umaimainthan; Wilmott, James S
Cancer Immunology Research - 1/09/2020
Using whole-genome sequencing data to derive the homologous recombination deficiency scores.
de Luca, Xavier M; Newell, Felicity; Kazakoff, Stephen H; Hartel, Gunter; McCart Reed, Amy E; Holmes, Oliver; Xu, Qinying; Wood, Scott; Leonard, Conrad; Pearson, John V; Lakhani, Sunil R; Waddell, Nicola; Nones, Katia; Simpson, Peter T
NPJ BREAST CANCER - 1/08/2020
Evaluation of next generation sequencing of DNA and RNA from archival formalin-fixed, paraffin-embedded pancreatic cancer tissue: A pilot study of the SEER-linked virtual tissue repository
Yuan, Yao; Van Dyke, Alison; Petkov, Valentina; Tuan, Alyssa; Singhi, Aatur; Matrisian, Lynn; Rahib, Lola; Pearson, John; Nones, Katia; Waddell, Nicola; Zhao, Yongmei; Shen, Tsai-wei; Tran, Bao; Shetty, Jyoti; Gillanders, Elizabeth; Carrick, Danielle; Cress, Rosemary; Mueller, Lloyd; Hernandez, Brenda; Lynch, Charles; Tucker, Thomas; Wu, Xiao-Cheng; Penberthy, Lynne
CANCER RESEARCH - 1/08/2020
APC Mutation Marks an Aggressive Subtype of BRAF Mutant Colorectal Cancers.
Fennell, Lochlan J; Kane, Alexandra; Liu, Cheng; McKeone, Diane; Fernando, Winnie; Su, Chang; Bond, Catherine; Jamieson, Saara; Dumenil, Troy; Patch, Ann-Marie; Kazakoff, Stephen H; Pearson, John V; Waddell, Nicola; Leggett, Barbara; Whitehall, Vicki L J
Cancers - 1/05/2020
National Health and Medical Research Council - 1050455