QIMR Berghofer
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Homologous Recombination DNA Repair Pathway Disruption and Retinoblastoma Protein Loss Are Associated with Exceptional Survival in High-Grade Serous Ovarian Cancer.
Garsed, Dale W; Alsop, Kathryn; Fereday, Sian; Emmanuel, Catherine; Kennedy, Catherine J; Etemadmoghadam, Dariush; Gao, Bo; Gebski, Val; Garès, Valérie; Christie, Elizabeth L; Wouters, Maartje C A; Milne, Katy; George, Joshy; Patch, Ann-Marie; Li, Jason; Arnau, Gisela Mir; Semple, Timothy; Gadipally, Sreeja R; Chiew, Yoke-Eng; Hendley, Joy; Mikeska, Thomas; Zapparoli, Giada V; Amarasinghe, Kaushalya; Grimmond, Sean M; Pearson, John V; Waddell, Nicola; Hung, Jillian; Stewart, Colin J R; Sharma, Raghwa; Allan, Prue E; Rambau, Peter F; Traficante, Nadia; McNally, Orla; Mileshkin, Linda; Hamilton, Anne; Ananda, Sumitra; Grossi, Marisa; Cohen, Paul A; Leung, Yee C; Rome, Robert M; Beale, Philip; Blomfield, Penny; Friedlander, Michael; Brand, Alison; Dobrovic, Alexander; Köbel, Martin; Harnett, Paul; Nelson, Brad H; Bowtell, David D L; deFazio, Anna; ,
CLINICAL CANCER RESEARCH - 1/10/2017
Department of Health and Human Services through Victorian Cancer Agency - ECSG15011
Tumor immunoevasion by the conversion of effector NK cells into type 1 innate lymphoid cells
Gao, Yulong; Souza-Fonseca-Guimaraes, Fernando; Bald, Tobias; Ng, Susanna S.; Young, Arabella; Ngiow, Shin Foong; Rautela, Jai; Straube, Jasmin; Waddell, Nic; Blake, Stephen J.; Yan, Juming; Bartholin, Laurent; Lee, Jason S.; Vivier, Eric; Takeda, Kazuyoshi; Messaoudene, Meriem; Zitvogel-, Laurence; Teng, Michele W. L.; Belz, Gabrielle T.; Engwerda, Christian R.; Huntington, Nicholas D.; Nakamura, Kyohei; Hoelzel, Michael; Smyth, Mark J.
NATURE IMMUNOLOGY - 1/09/2017
National Health and Medical Research Council of Australia - 1078671
EIF1AX and NRAS Mutations Co-occur and Cooperate in Low-Grade Serous Ovarian Carcinomas
Etemadmoghadam, Dariush; Azar, Walid J.; Lei, Ying; Moujaber, Tania; Garsed, Dale W.; Kennedy, Catherine J.; Fereday, Sian; Mitchell, Chris; Chiew, Yoke-Eng; Hendley, Joy; Sharma, Raghwa; Harnett, Paul; Li, Jason; Christie, Elizabeth L.; Patch, Ann-Marie; George, Joshy; Au-Yeung, George; Arnau, Gisela Mir; Holloway, Timothy P.; Semple, Timothy; Pearson, John V.; Waddell, Nicola; Grimmond, Sean M.; Kobel, Martin; Rizos, Helen; Lomakin, Ivan B.; Bowtell, David D. L.; deFazio, Anna
CANCER RESEARCH - 1/08/2017
Cancer Council New South Wales - RG-15-23
Next-Generation Sequencing of Endobronchial Ultrasound Transbronchial Needle Aspiration Specimens in Lung Cancer
Fielding, David; Dalley, Andrew J.; Bashirzadeh, Farzad; Singh, Mahendra; Nandakumar, Lakshmy; Reed, Amy E. McCart; Black, Debra; Kazakoff, Stephen; Nones, Katia; Pearson, John; Waddell, Nic; Lakhani, Sunil R.; Simpson, Peter T.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE - 1/08/2017
BrAshA-T - RM2016001474
Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage
Betts, Joshua A.; Marjaneh, Mahdi Moradi; Al-Ejeh, Fares; Lim, Yi Chieh; Shi, Wei; Sivakumaran, Haran; Tropee, Romain; Patch, Ann-Marie; Clark, Michael B.; Bartonicek, Nenad; Wiegmans, Adrian P.; Hillman, Kristine M.; Kaufmann, Susanne; Bain, Amanda L.; Gloss, Brian S.; Crawford, Joanna; Kazakoff, Stephen; Wani, Shivangi; Wen, Shu W.; Day, Bryan; Moller, Andreas; Cloonan, Nicole; Pearson, John; Brown, Melissa A.; Mercer, Timothy R.; Waddell, Nicola; Khanna, Kum Kum; Dray, Eloise; Dinger, Marcel E.; Edwards, Stacey L.; French, Juliet D.
AMERICAN JOURNAL OF HUMAN GENETICS - 1/08/2017
National Health and Medical Research Council of Australia (NHMRC) - 1021731
Whole exome sequencing of an asbestos-induced wild-type murine model of malignant mesothelioma
Sneddon, Sophie; Patch, Ann-Marie; Dick, Ian M.; Kazakoff, Stephen; Pearson, John V.; Waddell, Nicola; Allcock, Richard J. N.; Holt, Robert A.; Robinson, Bruce W. S.; Creaney, Jenette
BMC CANCER - 1/06/2017
Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma
Feigin, Michael E.; Garvin, Tyler; Bailey, Peter; Waddell, Nicola; Chang, David K.; Kelley, David R.; Shuai, Shimin; Gallinger, Steven; McPherson, John D.; Grimmond, Sean M.; Khurana, Ekta; Stein, Lincoln D.; Biankin, Andrew V.; Schatz, Michael C.; Tuveson, David A.
NATURE GENETICS - 1/06/2017
Whole-genome landscapes of major melanoma subtypes
Hayward, Nicholas K.; Wilmott, James S.; Waddell, Nicola; Johansson, Peter A.; Field, Matthew A.; Nones, Katia; Patch, Ann-Marie; Kakavand, Hojabr; Alexandrov, Ludmil B.; Burke, Hazel; Jakrot, Valerie; Kazakoff, Stephen; Holmes, Oliver; Leonard, Conrad; Sabarinathan, Radhakrishnan; Mularoni, Loris; Wood, Scott; Xu, Qinying; Waddell, Nick; Tembe, Varsha; Pupo, Gulietta M.; De Paoli-Iseppi, Ricardo; Vilain, Ricardo E.; Shang, Ping; Lau, Loretta M. S.; Dagg, Rebecca A.; Schramm, Sarah-Jane; Pritchard, Antonia; Dutton-Regester, Ken; Newell, Felicity; Fitzgerald, Anna; Shang, Catherine A.; Grimmond, Sean M.; Pickett, Hilda A.; Yang, Jean Y.; Stretch, Jonathan R.; Behren, Andreas; Kefford, Richard F.; Hersey, Peter; Long, Georgina V.; Cebon, Jonathan; Shackleton, Mark; Spillane, Andrew J.; Saw, Robyn P. M.; Lopez-Bigas, Nuria; Pearson, John V.; Thompson, John F.; Scolyer, Richard A.; Mann, Graham J.
NATURE - 1/05/2017
Lost in translation: returning germline genetic results in genome-scale cancer research
Johns, Amber L.; Mckay, Skye H.; Humphris, Jeremy L.; Pinese, Mark; Chantrill, Lorraine A.; Mead, R. Scott; Tucker, Katherine; Andrews, Lesley; Goodwin, Annabel; Leonard, Conrad; High, Hilda A.; Nones, Katia; Patch, Ann-Marie; Merrett, Neil D.; Pavlakis, Nick; Kassahn, Karin S.; Samra, Jaswinder S.; Miller, David K.; Chang, David K.; Pajic, Marina; Pearson, John V.; Grimmond, Sean M.; Waddell, Nicola; Zeps, Nikolajs; Gill, Anthony J.; Biankin, Andrew V.
GENOME MEDICINE - 1/04/2017
National Health and Medical Research Council of Australia (NHMRC) - 631701
Whole-genome landscape of pancreatic neuroendocrine tumours
Scarpa, Aldo; Chang, David K.; Nones, Katia; Corbo, Vincenzo; Patch, Ann-Marie; Bailey, Peter; Lawlor, Rita T.; Johns, Amber L.; Miller, David K.; Mafficini, Andrea; Rusev, Borislav; Scardoni, Maria; Antonello, Davide; Barbi, Stefano; Sikora, Katarzyna O.; Cingarlini, Sara; Vicentini, Caterina; Mckay, Skye; Quinn, Michael C. J.; Bruxner, Timothy J. C.; Christ, Angelika N.; Harliwong, Ivon; Idrisoglu, Senel; McLean, Suzanne; Nourse, Craig; Nourbakhsh, Ehsan; Wilson, Peter J.; Anderson, Matthew J.; Fink, J. Lynn; Newell, Felicity; Waddell, Nick; Holmes, Oliver; Kazakoff, Stephen H.; Leonard, Conrad; Wood, Scott; Xu, Qinying; Nagaraj, Shivashankar Hiriyur; Amato, Eliana; Dalai, Irene; Bersanif, Samantha; Cataldo, Ivana; Tos, Angelo P. Dei; Capelli, Paola; Davi, Maria Vittoria; Landoni, Luca; Malpaga, Anna; Miotto, Marco; Whitehall, Vicki L. J.; Leggett, Barbara A.; Harris, Janelle L.; Harris, Jonathan; Jones, Marc D.; Humphris, Jeremy; Chantrill, Lorraine A.; Chin, Venessa; Nagrial, Adnan M.; Pajic, Marina; Scarlett, Christopher J.; Pinho, Andreia; Rooman, Ilse; Toon, Christopher; Wu, Jianmin; Pinese, Mark; Cowley, Mark; Barbour, Andrew; Mawson, Amanda; Humphrey, Emily S.; Colvin, Emily K.; Chou, Angela; Lovell, Jessica A.; Jamieson, Nigel B.; Duthie, Fraser; Gingras, Marie-Claude; Fisher, William E.; Dagg, Rebecca A.; Lau, Loretta M. S.; Lee, Michael; Pickett, Hilda A.; Reddel, Roger R.; Samra, Jaswinder S.; Kench, James G.; Merrett, Neil D.; Epari, Krishna; Nguyen, Nam Q.; Zeps, Nikolajs; Falconi, Massimo; Simbolo, Michele; Butturini, Giovanni; Van Buren, George, II; Partelli, Stefano; Fassan, Matteo; Khanna, Kum Kum; Gill, Anthony J.; Wheeler, David A.; Gibbs, Richard A.; Musgrove, Elizabeth A.; Bassi, Claudio; Tortora, Giampaolo; Pederzoli, Paolo; Pearson, John V.; Waddell, Nicola; Biankin, Andrew V.; Grimmond, Sean M.
NATURE - 1/03/2017
Italian Ministry of Research - FIRB RBAP10AHJB
Mutation load in melanoma is affected by MC1R genotype
Johansson, Peter A.; Pritchard, Antonia L.; Patch, Ann-Marie; Wilmott, James S.; Pearson, John V.; Waddell, Nicola; Scolyer, Richard A.; Mann, Graham J.; Hayward, Nicholas K.
PIGMENT CELL & MELANOMA RESEARCH - 1/03/2017
Unexpected UVR and non-UVR mutation burden in some acral and cutaneous melanomas
Rawson, Robert V.; Johansson, Peter A.; Hayward, Nicholas K.; Waddell, Nicola; Patch, Ann-Marie; Lo, Serigne; Pearson, John V.; Thompson, John F.; Mann, Graham J.; Scolyer, Richard A.; Wilmott, James S.
LABORATORY INVESTIGATION - 1/02/2017
Hypermutation In Pancreatic Cancer
Humphris, Jeremy L.; Patch, Ann-Marie; Nones, Katia; Bailey, Peter J.; Johns, Amber L.; Mckay, Skye; Chang, David K.; Miller, David K.; Pajic, Marina; Kassahn, Karin S.; Quinn, Michael C. J.; Bruxner, Timothy J. C.; Christ, Angelika N.; Harliwong, Ivon; Idrisoglu, Senel; Manning, Suzanne; Nourse, Craig; Nourbakhsh, Ehsan; Stone, Andrew; Wilson, Peter J.; Anderson, Matthew; Fink, J. Lynn; Holmes, Oliver; Kazakoff, Stephen; Leonard, Conrad; Newell, Felicity; Waddell, Nick; Wood, Scott; Mead, Ronald S.; Xu, Qinying; Wu, Jianmin; Pinese, Mark; Cowley, Mark J.; Jones, Marc D.; Nagrial, Adnan M.; Chin, Venessa T.; Chantrill, Lorraine A.; Mawson, Amanda; Chou, Angela; Scarlett, Christopher J.; Pinho, Andreia V.; Rooman, Ilse; Giry-Laterriere, Marc; Samra, Jaswinder S.; Kench, James G.; Merrett, Neil D.; Toon, Christopher W.; Epari, Krishna; Nguyen, Nam Q.; Barbour, Andrew; Zeps, Nikolajs; Jamieson, Nigel B.; McKay, Colin J.; Carter, C. Ross; Dickson, Euan J.; Graham, Janet S.; Duthie, Fraser; Oien, Karin; Hair, Jane; Morton, Jennifer P.; Sansom, Owen J.; Gruetzmann, Robert; Hruban, Ralph H.; Maitra, Anirban; Iacobuzio-Donahue, Christine A.; Schulick, Richard D.; Wolfgang, Christopher L.; Morgan, Richard A.; Lawlor, Rita T.; Rusev, Borislav; Corbo, Vincenzo; Salvia, Roberto; Cataldo, Ivana; Tortora, Giampaolo; Tempero, Margaret A.; Hofmann, Oliver; Eshleman, James R.; Pilarsky, Christian; Scarpa, Aldo; Musgrove, Elizabeth A.; Gill, Anthony J.; Pearson, John V.; Grimmond, Sean M.; Waddell, Nicola; Biankin, Andrew V.
GASTROENTEROLOGY - 1/01/2017
National Health and Medical Research Council of Australia (NHMRC) - 631701
Studying Genomic and Epigenetic Aberrations by Microarray Profiling
Walker, Logan C.; Nones, Katia; Patch, Anne-Marie; Waddell, Nicola
ESSENTIAL FOR LIFE SCIENCES - 1/11/2016
Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance
Secrier, Maria; Li, Xiaodun; de Silva, Nadeera; Eldridge, Matthew D.; Contino, Gianmarco; Bornschein, Jan; MacRae, Shona; Grehan, Nicola; O'Donovan, Maria; Miremadi, Ahmad; Yang, Tsun-Po; Bower, Lawrence; Chettouh, Hamza; Crawte, Jason; Galeano-Dalmau, Nuria; Grabowska, Anna; Saunders, John; Underwood, Tim; Waddell, Nicola; Barbour, Andrew P.; Nutzinger, Barbara; Achilleos, Achilleas; Edwards, Paul A. W.; Lynch, Andy G.; Tavare, Simon; Fitzgerald, Rebecca C.
NATURE GENETICS - 1/10/2016
Cancer Research UK - RG66287
A Common Variant at the 14q32 Endometrial Cancer Risk Locus Activates AKT1 through YY1 Binding
Painter, Jodie N.; Kaufmann, Susanne; O'Mara, Tracy A.; Hillman, Kristine M.; Sivakumaran, Haran; Darabi, Hatef; Cheng, Timothy H. T.; Pearson, John; Kazakoff, Stephen; Waddell, Nicola; Hoivik, Erling A.; Goode, Ellen L.; Scott, Rodney J.; Tomlinson, Ian; Dunning, Alison M.; Easton, Douglas F.; French, Juliet D.; Salvesen, Helga B.; Pollock, Pamela M.; Thompson, Deborah J.; Spurdle, Amanda B.; Edwards, Stacey L.
AMERICAN JOURNAL OF HUMAN GENETICS - 1/06/2016
Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant
Li, Jun; Woods, Susan L.; Healey, Sue; Beesley, Jonathan; Chen, Xiaoqing; Lee, Jason S.; Sivakumaran, Haran; Wayte, Nicci; Nones, Katia; Waterfall, Joshua J.; Pearson, John; Patch, Anne-Marie; Senz, Janine; Ferreira, Manuel A.; Kaurah, Pardeep; Mackenzie, Robertson; Heravi-Moussavi, Alireza; Hansford, Samantha; Lannagan, Tamsin R. M.; Spurdle, Amanda B.; Simpson, Peter T.; Da Silva, Leonard; Lakhani, Sunil R.; Clouston, Andrew D.; Bettington, Mark; Grimpen, Florian; Busuttil, Rita A.; Di Costanzo, Natasha; Boussioutas, Alex; Jeanjean, Marie; Chong, George; Fabre, Aurelie; Olschwang, Sylviane; Faulkner, Geoffrey J.; Bellos, Evangelos; Coin, Lachlan; Rioux, Kevin; Bathe, Oliver F.; Wen, Xiaogang; Martin, Hilary C.; Neklason, Deborah W.; Davis, Sean R.; Walker, Robert L.; Calzone, Kathleen A.; Avital, Itzhak; Heller, Theo; Koh, Christopher; Pineda, Marbin; Rudloff, Udo; Quezado, Martha; Pichurin, Pavel N.; Hulick, Peter J.; Weissman, Scott M.; Newlin, Anna; Rubinstein, Wendy S.; Sampson, Jone E.; Hamman, Kelly; Goldgar, David; Poplawski, Nicola; Phillips, Kerry; Schofield, Lyn; Armstrong, Jacqueline; Kiraly-Borri, Cathy; Suthers, Graeme K.; Huntsman, David G.; Foulkes, William D.; Carneiro, Fatima; Lindor, Noralane M.; Edwards, Stacey L.; French, Juliet D.; Waddell, Nicola; Meltzer, Paul S.; Worthley, Daniel L.; Schrader, Kasmintan A.; Chenevix-Trench, Georgia
AMERICAN JOURNAL OF HUMAN GENETICS - 1/05/2016
NHMRC - GNT1045237
Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma
Krause, Lutz; Nones, Katia; Loffler, Kelly A.; Nancarrow, Derek; Oey, Harald; Tang, Yue Hang; Wayte, Nicola J.; Patch, Ann Marie; Patel, Kalpana; Brosda, Sandra; Manning, Suzanne; Lampe, Guy; Clouston, Andrew; Thomas, Janine; Stoye, Jens; Hussey, Damian J.; Watson, David I.; Lord, Reginald V.; Phillips, Wayne A.; Gotley, David; Smithers, B. Mark; Whiteman, David C.; Hayward, Nicholas K.; Grimmond, Sean M.; Waddell, Nic; Barbour, Andrew P.
CARCINOGENESIS - 1/04/2016
Australian National Health and Medical Research Council (NHMRC) - APP1021403
Genomic analyses identify molecular subtypes of pancreatic cancer
Baile, Peter; Chang, David K.; Nones, Katia; Johns, Amber L.; Patch, Ann-Marie; Gingras, Marie-Claude; Miller, David K.; Christ, Angelika N.; Bruxner, Tim J. C.; Quinn, Michael C.; Nourse, Craig; Murtaugh, L. Charles; Harliwong, Ivon; Idrisoglu, Senel; Manning, Suzanne; Nourbakhsh, Ehsan; Wani, Shivangi; Fink, J. Lynn; Holmes, Oliver; Chin, Vencssa; Anderson, Matthew J.; Kazakoff, Stephen; Leonard, Conrad; Newell, Felicity; Waddell, Nic; Wood, Scott; Xu, Qinying; Wilson, Peter J.; Cloonan, Nicole; Kassahn, Karin S.; Taylor, Darrin; Quek, Kelly; Robertson, Alan; Pantano, Lorena; Mincarelli, Laura; Sanchez, Luis N.; Evers, Lisa; Wu, Jianmin; Pinese, Mark; Cowley, Mark J.; Jones, Marc D.; Colvin, Emily K.; Nagrial, Adnan M.; Humphrey, Emily S.; Chantrill, Lorraine A.; Mawson, Amanda; Humphris, Jeremy; Chou, Angela; Pajic, Marina; Scarlett, Christopher J.; Pinho, Andreia V.; Giry-Laterriere, Marc; Rooman, Ilse; Samra, Jaswinder S.; Kench, James G.; Lovell, Jessica A.; Merrett, Neil D.; Toon, Christopher W.; Epari, Krishna; Nguyen, Nam Q.; Barbour, Andrew; Zeps, Nikolajs; Moran-Jones, Kim; Jamieson, Nigel B.; Graham, Janet S.; Duthie, Fraser; Oien, Karin; Hair, Jane; Gruetzmann, Robert; Maitra, Anirban; Iacobuzio-Donahue, Christine A.; Wolfgang, Christopher L.; Morgan, Richard A.; Lawlor, Rita T.; Corbo, Vincenzo; Bassi, Claudio; Rusev, Borislav; Capelli, Paola; Salvia, Roberto; Tortora, Giampaolo; Mukhopadhyay, Debabrata; Petersen, Gloria M.; Munzy, Donna M.; Fisher, William E.; Karim, Saadia A.; Eshleman, James R.; Hruban, Ralph H.; Pilarsky, Christian; Morton, Jennifer R.; Sansom, Owen J.; Scarpa, Aldo; Musgrove, Elizabeth A.; Bailey, Ulla-Maja Hagbo; Hofmann, Oliver; Sutherland, Robert L.; Wheeler, David A.; Gill, Anthony J.; Gibbs, Richard A.; Pearson, John V.; Waddell, Nicola; Biankin, Andrew V.; Grimmond, Sean M.
NATURE - 1/03/2016
National Health and Medical Research Council of Australia (NHMRC) - 631701
Genomics of pancreatic tumours - what we know
Patch, Ann-Marie; Barbour, Andrew; Waddell, Nicola
Cancer Forum - 1/03/2016
NHMRC - 1112113